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If GST Refund Isn’t Paid Within 60 Days — Interest Must Be Paid, Even If the Delay Was Due to a System Glitch

Namaste DOST!

Imagine this — you’ve paid your taxes, exported your goods, and done every compliance step right. Yet, your refund just doesn’t arrive — not because of your fault, but because of a technical glitch! That’s exactly what happened to Vineet Polyfab Pvt. Ltd. — and what followed became a defining moment for fairness under GST.


Summary:

The Gujarat High Court, in Vineet Polyfab Pvt. Ltd. & Anr. vs. Union of India & Ors. (Judgment dated 19.09.2025), ruled that exporters are entitled to interest on delayed GST refunds under Section 56 of the CGST Act when the delay is not their fault but caused by system errors.

Vineet Polyfab had duly exported goods and paid IGST, but refund processing failed due to a technical glitch in the ICEGATE–GSTN integration system. Though the refund was eventually processed manually after court intervention, interest on the delay was initially denied. The Court held that Section 56 makes payment of interest mandatory when refunds are delayed beyond 60 days, even if the cause is technical.


Facts of the Case

Vineet Polyfab Pvt. Ltd., an exporter of polyester draw-texturised yarn, filed five shipping bills at Hazira Port between March 2 and March 13, 2020.

The company had paid Integrated GST (IGST) of ₹7,53,469 on its export consignments.

However, when the refund claims were processed, no refund was sanctioned by the automated ICEGATE system. The system displayed the response code “SB000” — typically a success code — yet no refund amount appeared in the scroll generation report. In effect, the exporter was left without any refund despite full compliance.

Repeated follow-ups with the Directorate General of Systems, Saksham Helpdesk, and local customs yielded no solution. The State GST authorities declined to help, suggesting the exporter approach customs for scroll generation.

Left without recourse, Vineet Polyfab filed writ petitions before the Gujarat High Court seeking refund and interest on the delayed amount. After the Court’s initial hearing in June 2025, the Principal Commissioner finally approved manual refund processing, admitting that automated solutions had failed.

While the refund was eventually paid, interest under Section 56 of the CGST Act was not granted, with the Department alleging errors in the exporter’s filings — allegations unsupported by any record.


Legal Issue

The central question before the Court was:

“Whether an exporter is entitled to interest under Section 56 of the GST Act on delayed refund caused by a technical glitch — when there is no fault of the taxpayer?


Arguments


Petitioner’s View:

The petitioner contended that despite timely filing of all shipping bills and payment of IGST, the refund was delayed for over five years due to system errors. Under Section 56, the exporter was entitled to interest after 60 days from the date of application (the date of shipping bills).


Respondents’ Stand:

The Department argued that system integration between GSTN and ICEGATE failed due to mismatch or errors in filing. They also claimed the petitioner bore responsibility for accurate data entry. However, their own affidavit acknowledged that the refund was pending “due to technical glitch” and not due to any taxpayer error.


⚖️ Court’s Decision

The Division Bench of Hon’ble Justices Bhargav D. Karia and Pranav Trivedi of the Gujarat High Court held that the delay was entirely due to technical faults in the government system. The Court noted:

“There was no fault on the part of the petitioner for submitting the Shipping Bills, but there was a technical glitch in the system, which has resulted into delayed payment of the refund.”

The Court examined Section 56 of the CGST Act, which mandates payment of interest if refunds are not granted within 60 days from the date of application. It emphasised that the provision is mandatory and compensatory, not discretionary — meant to compensate taxpayers for the time value of money withheld without reason.

To reinforce its reasoning, the Court relied on the Supreme Court’s ruling in Ranbaxy Laboratories Ltd. v. Union of India (2011, 275 E.L.T. 3), where the apex court held that interest becomes payable automatically after the statutory period of delay, irrespective of the reasons for delay.

The Bench also cited its earlier decision in Panji Engineering Pvt. Ltd. v. Union of India (2023) 78 G.S.T.L. 214 (Guj.), which upheld similar principles of compensatory interest on delayed refunds.

Accordingly, the Court directed the respondent authorities to:

“Grant interest on the delayed refund to the petitioners in accordance with law within twelve weeks from receipt of the order.”


Legal Reasoning & Analysis

This judgment underscores that taxpayer rights do not vanish due to system failures. Section 56 acts as a safeguard ensuring accountability even in automated processes. The logic is straightforward — when money that legally belongs to the taxpayer is retained beyond the statutory period, interest must follow, just as it would if the taxpayer delayed payment to the government.

The Court clarified that Section 56 mirrors Section 11BB of the Central Excise Act, making the jurisprudence settled: interest becomes due automatically after 60 days, without the need for a separate demand or proof of mala fide intent by the department.


Important Message for Every Business Owner:

  • Interest is your right: If your refund is delayed beyond 60 days, even due to “system glitches,” you are legally entitled to interest under Section 56 of the GST Act.

  • Keep documentation ready: Always maintain copies of refund applications, shipping bills, and correspondence. These are crucial when technical errors occur.

  • Don’t accept “technical glitch” as a final answer: The law protects you against administrative and software failures — not just procedural ones.

  • File writ petitions if required: Courts have consistently upheld the right to compensatory interest for delayed refunds.

  • System automation ≠ immunity: Even automated systems are bound by statutory timelines. Responsibility cannot be shifted to taxpayers.


Why This Matters

This ruling reinforces the idea that justice under GST is not conditional on technology. As India digitizes its tax system, accountability must remain human — when systems fail, taxpayers shouldn’t suffer. The Gujarat High Court’s decision in Vineet Polyfab strengthens taxpayer confidence that fairness will prevail, even against invisible errors in code.


Conclusion

What began as a small exporter’s struggle against a computer glitch ended with a powerful reaffirmation of taxpayer rights. Vineet Polyfab Pvt. Ltd. reminds us that while systems may err, the law stands as the ultimate safeguard.

At GST DOST, we believe that every compliant taxpayer deserves both transparency and timely justice — because in taxation, as in life, fairness delayed is fairness denied.

“📞 Need help with a similar refund delay or GST litigation? Contact GST DOST for personalised support and expert representation.


FAQ

Q1. What was the dispute in this case?

A: The exporter’s IGST refund on exports was delayed for years due to a system glitch between GSTN and ICEGATE. The issue was whether interest was payable for this delay.


Q2. What did the Gujarat High Court decide?

A: The Court ruled that the taxpayer was entitled to interest under Section 56 of the CGST Act since the refund delay was not the taxpayer’s fault.


Q3. From when is interest payable on delayed GST refunds?

A: Interest becomes payable after 60 days from the date of the refund application (in export cases, typically the date of the shipping bill).


Q4. Will interest be paid even if the delay was due to a technical glitch?

A: Yes. If the refund delay was not caused by you but occurred due to a system or technical error, then receiving interest is your legal right — the Court has made this absolutely clear.


Q5. What can taxpayers do if their GST refund is stuck due to a technical issue?

A: They should maintain all records, escalate to GSTN/customs, and if unresolved, approach the High Court citing Vineet Polyfab Pvt. Ltd. v. Union of India (2025) as precedent.


References

  • Case: Vineet Polyfab Pvt. Ltd. & Anr. v. Union of India & Ors., Gujarat High Court, Judgment dated 19.09.2025, R/SCA No. 17720 of 2024.

  • Statutory Provision: Section 56, Central Goods and Services Tax Act, 2017 – Interest on delayed refunds.
  • Cited Cases:

    • Ranbaxy Laboratories Ltd. v. Union of India (2011) 275 E.L.T. 3 (SC)

    • Panji Engineering Pvt. Ltd. v. Union of India (2023) 78 G.S.T.L. 214 (Guj.)


Vikash Dhanania

Founder of GST DOST, is a seasoned CA with exceptional expertise in GST. Honored with the prestigious Hariyana Pratibha Puruskaar, Vikash is known in the market as DOST, reflecting his friendly and supportive approach. He excels in leveraging AI, KI, and EI to deliver impactful solutions that satisfy clients. An accomplished author, prolific blogger, and creator of educational videos for the business community, he also launched the groundbreaking online GST talk show, "GST ki Baat Dost ke Saath."

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